Thanks for the suggestions.
I did the factory reset and re-ran the AutuEQ and found that its not that accurate on distances< the left and right should have been equal distant but they werent. The sub was twice the distance away. So tomorrow I will manually set up. the distances with a tape measure and the levels with a decibel meter.
I have tried what Mojo suggested about listening to familiar music and found that the higher frequencies like a violin are not as bright as they should be. I think the screen is muffling them a bit. I will also play with the eq in the above 160 range to try and remove the muffling. If I can figure out the post a picture feature I will show the Onkyos Eq.
